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P3H2 prolyl 3-hydroxylase 2 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111172711, updated on 15-Mar-2024

Summary

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Gene symbol
P3H2
Gene description
prolyl 3-hydroxylase 2
See related
Ensembl:ENSDLEG00000014000
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See P3H2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098104.1 (89288387..89447147)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160855.1 (65177531..65336510)

NW_022098104.1Genomic Context describing neighboring genes Neighboring gene craniofacial development protein 1-like Neighboring gene claudin 1 Neighboring gene TP53-regulated inhibitor of apoptosis 1 pseudogene Neighboring gene tumor protein p63

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098104.1 Reference ASM228892v3 Primary Assembly

    Range
    89288387..89447147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022569619.2 → XP_022425327.1  prolyl 3-hydroxylase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9N1R2
    Related
    ENSDLEP00000019239.1, ENSDLET00000021200.1
    Conserved Domains (2) summary
    smart00702
    Location:470 → 668
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    cl26155
    Location:312 → 373
    BamD; BamD lipoprotein, a component of the beta-barrel assembly machinery

  2. XM_022569626.2 → XP_022425334.1  prolyl 3-hydroxylase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9MSH3
    Conserved Domains (2) summary
    smart00702
    Location:315 → 513
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    cl26155
    Location:157 → 218
    BamD; BamD lipoprotein, a component of the beta-barrel assembly machinery

  3. XM_022569633.2 → XP_022425341.1  prolyl 3-hydroxylase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9MWM9
    Conserved Domains (2) summary
    smart00702
    Location:297 → 495
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    cl26155
    Location:139 → 200
    BamD; BamD lipoprotein, a component of the beta-barrel assembly machinery
Nucleotide Protein
Heading Accession and Version

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