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CHST13 carbohydrate sulfotransferase 13 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111168814, updated on 15-Mar-2024

Summary

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Gene symbol
CHST13
Gene description
carbohydrate sulfotransferase 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See CHST13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098058.1 (8432809..8445204, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160992.1 (3053510..3065906, complement)

NW_022098058.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase 3 Neighboring gene chromosome unknown C3orf22 homolog Neighboring gene urocanate hydratase 1 Neighboring gene zinc finger protein ZXDC-like Neighboring gene solute carrier family 41 member 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098058.1 Reference ASM228892v3 Primary Assembly

    Range
    8432809..8445204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022562551.1 → XP_022418259.1  carbohydrate sulfotransferase 13 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9M7W2
    Conserved Domains (1) summary
    pfam03567
    Location:102 → 331
    Sulfotransfer_2; Sulfotransferase family

  2. XM_022562548.1 → XP_022418256.1  carbohydrate sulfotransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9MB85
    Conserved Domains (1) summary
    pfam03567
    Location:95 → 324
    Sulfotransfer_2; Sulfotransferase family

  3. XM_022562550.1 → XP_022418258.1  carbohydrate sulfotransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9MM82
    Conserved Domains (1) summary
    pfam03567
    Location:49 → 278
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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