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GPLD1 glycosylphosphatidylinositol specific phospholipase D1 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111168561, updated on 15-Mar-2024

Summary

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Gene symbol
GPLD1
Gene description
glycosylphosphatidylinositol specific phospholipase D1
See related
Ensembl:ENSDLEG00000016088
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See GPLD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098071.1 (577429..661011, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160989.1 (574947..657759, complement)

NW_022098071.1Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 2 Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene magnesium transporter MRS2 Neighboring gene aldehyde dehydrogenase 5 family member A1 Neighboring gene KIAA0319 ortholog Neighboring gene tyrosyl-DNA phosphodiesterase 2 Neighboring gene acyl-CoA thioesterase 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosylphosphatidylinositol phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor release IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol-glycan-specific phospholipase D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098071.1 Reference ASM228892v3 Primary Assembly

    Range
    577429..661011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022562337.2 → XP_022418045.1  phosphatidylinositol-glycan-specific phospholipase D isoform X6

    UniProtKB/TrEMBL
    A0A2Y9M8H1
    Conserved Domains (3) summary
    smart00191
    Location:445 → 501
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:28 → 220
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:513 → 540
    FG-GAP; FG-GAP repeat

  2. XM_022562332.2 → XP_022418040.1  phosphatidylinositol-glycan-specific phospholipase D isoform X2

    UniProtKB/TrEMBL
    A0A2Y9MAM1
    Related
    ENSDLEP00000022160.1, ENSDLET00000024399.1
    Conserved Domains (3) summary
    smart00191
    Location:455 → 511
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam01839
    Location:523 → 550
    FG-GAP; FG-GAP repeat
    pfam00882
    Location:37 → 228
    Zn_dep_PLPC; Zinc dependent phospholipase C

  3. XM_030760248.1 → XP_030616108.1  phosphatidylinositol-glycan-specific phospholipase D isoform X2

    UniProtKB/TrEMBL
    A0A2Y9MAM1
    Conserved Domains (3) summary
    smart00191
    Location:455 → 511
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam01839
    Location:523 → 550
    FG-GAP; FG-GAP repeat
    pfam00882
    Location:37 → 228
    Zn_dep_PLPC; Zinc dependent phospholipase C

  4. XM_030760249.1 → XP_030616109.1  phosphatidylinositol-glycan-specific phospholipase D isoform X4

    UniProtKB/TrEMBL
    A0A7F8K3Z6
    Conserved Domains (3) summary
    smart00191
    Location:447 → 503
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam01839
    Location:515 → 542
    FG-GAP; FG-GAP repeat
    pfam00882
    Location:37 → 228
    Zn_dep_PLPC; Zinc dependent phospholipase C

  5. XM_022562331.2 → XP_022418039.1  phosphatidylinositol-glycan-specific phospholipase D isoform X1

    UniProtKB/TrEMBL
    A0A2Y9M7A3
    Conserved Domains (3) summary
    smart00191
    Location:455 → 511
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:37 → 229
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:523 → 550
    FG-GAP; FG-GAP repeat

  6. XM_022562334.2 → XP_022418042.1  phosphatidylinositol-glycan-specific phospholipase D isoform X3

    UniProtKB/TrEMBL
    A0A2Y9MG87
    Related
    ENSDLEP00000022208.1, ENSDLET00000024446.1
    Conserved Domains (3) summary
    smart00191
    Location:450 → 506
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:32 → 224
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:518 → 545
    FG-GAP; FG-GAP repeat

  7. XM_022562336.2 → XP_022418044.1  phosphatidylinositol-glycan-specific phospholipase D isoform X5

    UniProtKB/TrEMBL
    A0A2Y9M7A8
    Conserved Domains (3) summary
    smart00191
    Location:446 → 502
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam00882
    Location:28 → 220
    Zn_dep_PLPC; Zinc dependent phospholipase C
    pfam01839
    Location:514 → 541
    FG-GAP; FG-GAP repeat
Nucleotide Protein
Heading Accession and Version

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