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XYLT2 xylosyltransferase 2 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111166270, updated on 15-Mar-2024

Summary

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Gene symbol
XYLT2
Gene description
xylosyltransferase 2
See related
Ensembl:ENSDLEG00000005230
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See XYLT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098018.1 (7412906..7428994)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160956.1 (5725425..5741513)

NW_022098018.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111166409 Neighboring gene collagen type I alpha 1 chain Neighboring gene transmembrane protein 92 Neighboring gene protein SET-like Neighboring gene mitochondrial ribosomal protein L27 Neighboring gene essential meiotic structure-specific endonuclease 1 Neighboring gene leucine rich repeat containing 59

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098018.1 Reference ASM228892v3 Primary Assembly

    Range
    7412906..7428994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022557810.1 → XP_022413518.1  xylosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9M809
    Related
    ENSDLEP00000007049.1, ENSDLET00000007806.1
    Conserved Domains (2) summary
    pfam02485
    Location:233 → 485
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:518 → 698
    Xylo_C; Xylosyltransferase C terminal

  2. XM_030762058.1 → XP_030617918.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9LXK4
    Related
    ENSDLEP00000007055.1, ENSDLET00000007812.1
    Conserved Domains (2) summary
    pfam02485
    Location:199 → 451
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:484 → 664
    Xylo_C; Xylosyltransferase C terminal

  3. XM_022557816.1 → XP_022413524.1  xylosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9M815
    Conserved Domains (2) summary
    pfam02485
    Location:144 → 396
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:429 → 609
    Xylo_C; Xylosyltransferase C terminal

  4. XM_030762057.1 → XP_030617917.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9LXK4
    Conserved Domains (2) summary
    pfam02485
    Location:199 → 451
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:484 → 664
    Xylo_C; Xylosyltransferase C terminal

  5. XM_030762059.1 → XP_030617919.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9LXK4
    Conserved Domains (2) summary
    pfam02485
    Location:199 → 451
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:484 → 664
    Xylo_C; Xylosyltransferase C terminal

  6. XM_022557813.2 → XP_022413521.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9LXK4
    Conserved Domains (2) summary
    pfam02485
    Location:199 → 451
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:484 → 664
    Xylo_C; Xylosyltransferase C terminal

  7. XM_022557814.2 → XP_022413522.1  xylosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9M815
    Conserved Domains (2) summary
    pfam02485
    Location:144 → 396
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:429 → 609
    Xylo_C; Xylosyltransferase C terminal

  8. XM_022557815.1 → XP_022413523.1  xylosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9M815
    Conserved Domains (2) summary
    pfam02485
    Location:144 → 396
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:429 → 609
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
Heading Accession and Version

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