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PNPLA6 patatin like phospholipase domain containing 6 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111165997, updated on 15-Mar-2024

Summary

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Gene symbol
PNPLA6
Gene description
patatin like phospholipase domain containing 6
See related
Ensembl:ENSDLEG00000017320
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See PNPLA6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
35
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098054.1 (2453594..2476059, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160955.1 (2432333..2454798, complement)

NW_022098054.1Genomic Context describing neighboring genes Neighboring gene XPA binding protein 2 Neighboring gene calmodulin regulated spectrin associated protein family member 3 Neighboring gene mucolipin TRP cation channel 1 Neighboring gene zinc finger protein 358

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylcholine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuropathy target esterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098054.1 Reference ASM228892v3 Primary Assembly

    Range
    2453594..2476059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022557172.1 → XP_022412880.1  neuropathy target esterase isoform X7

    UniProtKB/TrEMBL
    A0A2Y9LU33
    Related
    ENSDLEP00000023900.1, ENSDLET00000026287.1
    Conserved Domains (2) summary
    cd07225
    Location:915 → 1220
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:587 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  2. XM_022557171.1 → XP_022412879.1  neuropathy target esterase isoform X6

    UniProtKB/TrEMBL
    A0A2Y9LT72
    Conserved Domains (2) summary
    cd07225
    Location:916 → 1221
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:587 → 695
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  3. XM_022557170.1 → XP_022412878.1  neuropathy target esterase isoform X5

    UniProtKB/TrEMBL
    A0A2Y9M687
    Conserved Domains (2) summary
    cd07225
    Location:938 → 1243
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:587 → 694
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  4. XM_022557166.2 → XP_022412874.1  neuropathy target esterase isoform X1

    UniProtKB/TrEMBL
    A0A2Y9LT67
    Conserved Domains (2) summary
    cd07225
    Location:976 → 1281
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:625 → 732
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  5. XM_022557167.2 → XP_022412875.1  neuropathy target esterase isoform X2

    UniProtKB/TrEMBL
    A0A2Y9LU28
    Conserved Domains (2) summary
    cd07225
    Location:975 → 1280
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:625 → 732
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  6. XM_022557168.2 → XP_022412876.1  neuropathy target esterase isoform X3

    UniProtKB/TrEMBL
    A0A2Y9LVV9
    Conserved Domains (2) summary
    cd07225
    Location:954 → 1259
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:625 → 733
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  7. XM_022557169.2 → XP_022412877.1  neuropathy target esterase isoform X4

    UniProtKB/TrEMBL
    A0A2Y9M0T4
    Conserved Domains (2) summary
    cd07225
    Location:953 → 1258
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:625 → 733
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  8. XM_022557173.1 → XP_022412881.1  neuropathy target esterase isoform X8

    UniProtKB/TrEMBL
    A0A2Y9LVW4
    Conserved Domains (2) summary
    cd07225
    Location:875 → 1180
    Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
    cd00038
    Location:524 → 631
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

  9. XM_022557174.2 → XP_022412882.1  neuropathy target esterase isoform X9

    UniProtKB/TrEMBL
    A0A2Y9M0T8
    Conserved Domains (2) summary
    cd00038
    Location:625 → 732
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    cl11396
    Location:976 → 1154
    Patatin_and_cPLA2; Patatins and Phospholipases
Nucleotide Protein
Heading Accession and Version

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