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NYX nyctalopin [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111165573, updated on 15-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See NYX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098050.1 (6296331..6314474)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160949.1 (2425013..2443156)

NW_022098050.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene BTB/POZ domain-containing protein KCTD2 pseudogene Neighboring gene signal recognition particle 14 kDa protein-like Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene G protein-coupled receptor 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098050.1 Reference ASM228892v3 Primary Assembly

    Range
    6296331..6314474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022556413.1 → XP_022412121.1  nyctalopin

    UniProtKB/TrEMBL
    A0A2Y9LTS7
    Conserved Domains (6) summary
    TIGR00864
    Location:284 → 396
    PCC; polycystin cation channel protein
    smart00082
    Location:332 → 366
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:324 → 336
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:64 → 83
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:62 → 116
    LRR_8; Leucine rich repeat
    cl26018
    Location:42 → 202
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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