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SMPD4 sphingomyelin phosphodiesterase 4 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111162936, updated on 15-Mar-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
See related
Ensembl:ENSDLEG00000012818
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098052.1 (9941499..9962333, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160923.1 (9943533..9964370, complement)

NW_022098052.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 15 Neighboring gene coiled-coil domain-containing protein 74B-like Neighboring gene tubulin alpha-3 chain Neighboring gene mitotic spindle organizing protein 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098052.1 Reference ASM228892v3 Primary Assembly

    Range
    9941499..9962333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022551240.2 → XP_022406948.1  sphingomyelin phosphodiesterase 4 isoform X6

    UniProtKB/TrEMBL
    A0A2Y9LNT6
    Related
    ENSDLEP00000020253.1, ENSDLET00000022323.1
    Conserved Domains (1) summary
    pfam14724
    Location:48 → 783
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_022551237.2 → XP_022406945.1  sphingomyelin phosphodiesterase 4 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9LB88
    Related
    ENSDLEP00000020147.1, ENSDLET00000022208.1
    Conserved Domains (1) summary
    pfam14724
    Location:48 → 812
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  3. XM_022551235.2 → XP_022406943.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9LE03
    Conserved Domains (1) summary
    pfam14724
    Location:65 → 829
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  4. XM_022551234.2 → XP_022406942.1  sphingomyelin phosphodiesterase 4 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9LE03
    Conserved Domains (1) summary
    pfam14724
    Location:65 → 829
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  5. XM_030764307.1 → XP_030620167.1  sphingomyelin phosphodiesterase 4 isoform X4

    UniProtKB/TrEMBL
    A0A7F8KJ24
    Conserved Domains (1) summary
    pfam14724
    Location:65 → 800
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  6. XM_022551239.2 → XP_022406947.1  sphingomyelin phosphodiesterase 4 isoform X5

    UniProtKB/TrEMBL
    A0A2Y9LIN9
    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  7. XM_022551236.2 → XP_022406944.1  sphingomyelin phosphodiesterase 4 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9LB95
    Conserved Domains (1) summary
    pfam14724
    Location:53 → 817
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
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