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LOC111162622 DeltaNp63 promoter of tumor protein p63 [ Mus musculus (house mouse) ]

Gene ID: 111162622, updated on 9-Aug-2024

Summary

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Gene symbol
LOC111162622
Gene description
DeltaNp63 promoter of tumor protein p63
Gene type
biological region
Feature type(s)
protein_bind
regulatory: CAAT_signal, DNase_I_hypersensitive_site, promoter
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr366813
Summary
This region represents a DNaseI hypersensitive site spanning the proximal promoter of the deltaNp63 alternate variant of the tumor protein p63 gene. This promoter may be regulated by binding of Sp1/Sp3 transcription factors, nuclear transcription factor Y, and POU family transcription factors to sites in this sequence. [provided by RefSeq, Sep 2017]
Orthologs
human all
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Genomic context

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See LOC111162622 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (25620454..25621054)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (25801704..25802304)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene UPF0568 protein C14orf166 homolog Neighboring gene transformation related protein 63 Neighboring gene predicted gene, 24928 Neighboring gene C15 enhancer in intron of tumor protein p63 gene Neighboring gene STARR-seq mESC enhancer starr_40480 Neighboring gene STARR-seq mESC enhancer starr_40481 Neighboring gene STARR-seq mESC enhancer starr_40482 Neighboring gene C40 intronic enhancer of tumor protein p63 gene Neighboring gene predicted gene 4524 Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene VISTA enhancer mm1095 Neighboring gene VISTA enhancer mm1097 Neighboring gene expressed sequence AU015336

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defining the regulatory elements in the proximal promoter of DeltaNp63 in keratinocytes: Potential roles for Sp1/Sp3, NF-Y, and p63. Romano RA, et al. J Invest Dermatol, 2006 Jul. PMID 16645595
  2. SIX1 cooperates with RUNX1 and SMAD4 in cell fate commitment of Müllerian duct epithelium. Terakawa J, et al. Cell Death Differ, 2020 Dec. PMID 32572167, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SIX1 cooperates with RUNX1 and SMAD4 in cell fate commitment of Mullerian duct epithelium.
    Title: SIX1 cooperates with RUNX1 and SMAD4 in cell fate commitment of Müllerian duct epithelium.
Submit: New GeneRIF Correction

General gene information

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Homology

Other Names

  • regulatory region 366813

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_055553.1 

    Range
    101..701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    25620454..25621054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version