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LOC111160918 calpain 3 [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111160918, updated on 15-Mar-2024

Summary

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Gene symbol
LOC111160918
Gene description
calpain 3
See related
EnsemblRapid:ENSELKG00000000558
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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See LOC111160918 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154088.1 (11052058..11100676)

NW_019154088.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene glucosidase alpha, neutral C Neighboring gene zinc finger protein 106 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154088 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154088.1 Reference ASM228890v2 Primary Assembly

    Range
    11052058..11100676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022524305.1 → XP_022380013.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9L3S3
    Related
    ENSELKP00000001756.1, ENSELKT00000001968.1
    Conserved Domains (4) summary
    pfam00648
    Location:77 → 415
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:436 → 579
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:583 → 653
    Calpain_u2; Unstructured region on Calpain-3
    cd16190
    Location:653 → 821
    EFh_PEF_CAPN3; Calcium-activated neutral

  2. XM_022524313.1 → XP_022380021.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9L291
    Related
    ENSELKP00000001773.1, ENSELKT00000001989.1
    Conserved Domains (4) summary
    pfam00648
    Location:77 → 415
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:436 → 579
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:583 → 647
    Calpain_u2; Unstructured region on Calpain-3
    cd16190
    Location:647 → 815
    EFh_PEF_CAPN3; Calcium-activated neutral

  3. XM_022524322.1 → XP_022380030.1  calpain-3 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9LEN7
    Related
    ENSELKP00000001800.1, ENSELKT00000002021.1
    Conserved Domains (3) summary
    pfam00648
    Location:77 → 367
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:388 → 531
    Calpain_III; Calpain large subunit, domain III
    cd16190
    Location:561 → 729
    EFh_PEF_CAPN3; Calcium-activated neutral
Nucleotide Protein
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