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IMP4 IMP U3 small nucleolar ribonucleoprotein 4 [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111159898, updated on 15-Mar-2024

Summary

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Gene symbol
IMP4
Gene description
IMP U3 small nucleolar ribonucleoprotein 4
See related
EnsemblRapid:ENSELKG00000019741
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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See IMP4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154155.1 (7298968..7303734, complement)

NW_019154155.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111159881 Neighboring gene protein tyrosine phosphatase non-receptor type 18 Neighboring gene coiled-coil domain containing 115 Neighboring gene transfer RNA glutamic acid (anticodon UUC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154155 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA primary transcript binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mpp10 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar ribonucleoprotein protein IMP4
Names
IMP4, U3 small nucleolar ribonucleoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154155.1 Reference ASM228890v2 Primary Assembly

    Range
    7298968..7303734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022522569.1 → XP_022378277.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9KX50
    Conserved Domains (1) summary
    smart00879
    Location:86 → 280
    Brix; The Brix domain is found in a number of eukaryotic proteins

  2. XM_022522571.1 → XP_022378279.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9L3T1
    Conserved Domains (1) summary
    smart00879
    Location:86 → 240
    Brix; The Brix domain is found in a number of eukaryotic proteins

  3. XM_022522570.1 → XP_022378278.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9KYW4
    Related
    ENSELKP00000026277.1, ENSELKT00000029128.1
    Conserved Domains (1) summary
    smart00879
    Location:86 → 253
    Brix; The Brix domain is found in a number of eukaryotic proteins

  4. XM_022522567.1 → XP_022378275.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9KX50
    Conserved Domains (1) summary
    smart00879
    Location:86 → 280
    Brix; The Brix domain is found in a number of eukaryotic proteins

  5. XM_022522568.1 → XP_022378276.1  U3 small nucleolar ribonucleoprotein protein IMP4 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9KX50
    Conserved Domains (1) summary
    smart00879
    Location:86 → 280
    Brix; The Brix domain is found in a number of eukaryotic proteins
Nucleotide Protein
Heading Accession and Version

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