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LOC111148083 general transcription factor IIA subunit 1 like [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111148083, updated on 15-Mar-2024

Summary

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Gene symbol
LOC111148083
Gene description
general transcription factor IIA subunit 1 like
See related
EnsemblRapid:ENSELKG00000019471
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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See LOC111148083 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154102.1 (1379104..1435464)

NW_019154102.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 21 Neighboring gene stonin-1 Neighboring gene luteinizing hormone/choriogonadotropin receptor Neighboring gene follicle stimulating hormone receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154102 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TFIIA-alpha and beta-like factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154102.1 Reference ASM228890v2 Primary Assembly

    Range
    1379104..1435464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022504476.1 → XP_022360184.1  TFIIA-alpha and beta-like factor isoform X1

    UniProtKB/TrEMBL
    A0A2Y9JKP5
    Related
    ENSELKP00000025971.1, ENSELKT00000028797.1
    Conserved Domains (1) summary
    pfam03153
    Location:10 → 477
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. XM_022504477.1 → XP_022360185.1  TFIIA-alpha and beta-like factor isoform X2

    UniProtKB/TrEMBL
    A0A2Y9JQV1
    Related
    ENSELKP00000025980.1, ENSELKT00000028807.1
    Conserved Domains (1) summary
    pfam03153
    Location:8 → 443
    TFIIA; Transcription factor IIA, alpha/beta subunit
Nucleotide Protein
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