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LOC111144455 general transcription factor IIE subunit 2 [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111144455, updated on 15-Mar-2024

Summary

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Gene symbol
LOC111144455
Gene description
general transcription factor IIE subunit 2
See related
EnsemblRapid:ENSELKG00000010757
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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See LOC111144455 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154095.1 (16623229..16686981)

NW_019154095.1Genomic Context describing neighboring genes Neighboring gene toll like receptor 3 Neighboring gene cytochrome P450 4V2 Neighboring gene protein SET-like Neighboring gene small integral membrane protein 18 Neighboring gene tetraspanin-17 pseudogene Neighboring gene uncharacterized LOC111144423 Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene 60S ribosomal protein L34-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154095 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIE subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154095.1 Reference ASM228890v2 Primary Assembly

    Range
    16623229..16686981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022498771.1 → XP_022354479.1  transcription initiation factor IIE subunit beta

    UniProtKB/TrEMBL
    A0A2Y9J434
    Related
    ENSELKP00000014168.1, ENSELKT00000015772.1
    Conserved Domains (2) summary
    cd07977
    Location:68 → 146
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam18121
    Location:146 → 204
    TFA2_Winged_2; TFA2 Winged helix domain 2
Nucleotide Protein
Heading Accession and Version

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