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LOC111139008 kirre like nephrin family adhesion molecule 1 [ Enhydra lutris kenyoni (northern sea otter) ]

Gene ID: 111139008, updated on 15-Mar-2024

Summary

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Gene symbol
LOC111139008
Gene description
kirre like nephrin family adhesion molecule 1
See related
EnsemblRapid:ENSELKG00000016998
Gene type
protein coding
RefSeq status
MODEL
Organism
Enhydra lutris kenyoni (sub-species: kenyoni)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra
Orthologs
human mouse all
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Genomic context

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See LOC111139008 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM228890v2 (GCF_002288905.1) Unplaced Scaffold NW_019154178.1 (3120629..3208347)

NW_019154178.1Genomic Context describing neighboring genes Neighboring gene CD5 molecule like Neighboring gene Fc receptor-like protein 3 Neighboring gene CD1d molecule Neighboring gene uncharacterized LOC111138981

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019154178 Unplaced Scaffold Reference ASM228890v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Enhydra lutris kenyoni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228890v2 Primary Assembly

Genomic

  1. NW_019154178.1 Reference ASM228890v2 Primary Assembly

    Range
    3120629..3208347
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022491087.1 → XP_022346795.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9IL92
    Related
    ENSELKP00000022757.1, ENSELKT00000025254.1
    Conserved Domains (4) summary
    cd05759
    Location:138 → 219
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:407 → 504
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13927
    Location:308 → 389
    Ig_3; Immunoglobulin domain
    cl28434
    Location:22 → 116
    I-set; Immunoglobulin I-set domain

  2. XM_022491088.1 → XP_022346796.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9IEK2
    Conserved Domains (4) summary
    cd05759
    Location:138 → 219
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:391 → 488
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13927
    Location:308 → 373
    Ig_3; Immunoglobulin domain
    cl28434
    Location:22 → 116
    I-set; Immunoglobulin I-set domain

  3. XM_022491089.1 → XP_022346797.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9IDN1
    Related
    ENSELKP00000022797.1, ENSELKT00000025294.1
    Conserved Domains (4) summary
    cd05759
    Location:38 → 119
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:291 → 388
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13927
    Location:208 → 273
    Ig_3; Immunoglobulin domain
    cl28434
    Location:123 → 204
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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