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LOC111127555 E3 ubiquitin-protein ligase CBL-like [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111127555, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111127555
Gene description
E3 ubiquitin-protein ligase CBL-like
See related
EnsemblRapid:LOC111127555
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111127555 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 3 NC_035782.1 (39428836..39448234)

Chromosome 3 - NC_035782.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111123563 Neighboring gene TBC1 domain family member 23-like Neighboring gene protein AAR2 homolog Neighboring gene uncharacterized LOC111124227

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035782.1 Chromosome 3 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphotyrosine residue binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of epidermal growth factor-activated receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane raft IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035782.1 Reference C_virginica-3.0 Primary Assembly

    Range
    39428836..39448234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022472775.1 → XP_022328483.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-like

    UniProtKB/TrEMBL
    A0A8B8DL35
    Related
    XP_022328483.1, XM_022472775.1
    Conserved Domains (4) summary
    cd09920
    Location:242 → 335
    SH2_Cbl-b_TKB; Src homology 2 (SH2) domain found in the Cbl-b TKB domain
    pfam02262
    Location:39 → 159
    Cbl_N; CBL proto-oncogene N-terminal domain 1
    pfam02761
    Location:164 → 247
    Cbl_N2; CBL proto-oncogene N-terminus, EF hand-like domain
    cd16709
    Location:347 → 412
    RING-HC_Cbl-b; RING finger, HC subclass, found in E3 ubiquitin-protein ligase Cbl-b and similar proteins
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases