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LOC111127553 TBC1 domain family member 23-like [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111127553, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111127553
Gene description
TBC1 domain family member 23-like
See related
EnsemblRapid:LOC111127553
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111127553 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 3 NC_035782.1 (39414534..39428746, complement)

Chromosome 3 - NC_035782.1Genomic Context describing neighboring genes Neighboring gene gastric triacylglycerol lipase-like Neighboring gene uncharacterized LOC111123563 Neighboring gene E3 ubiquitin-protein ligase CBL-like Neighboring gene protein AAR2 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035782.1 Chromosome 3 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle tethering to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: TBC1 domain family member 23-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035782.1 Reference C_virginica-3.0 Primary Assembly

    Range
    39414534..39428746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022472774.1 → XP_022328482.1  LOW QUALITY PROTEIN: TBC1 domain family member 23-like

    UniProtKB/TrEMBL
    A0A8B8DK04
    Related
    XP_022328482.1, XM_022472774.1
    Conserved Domains (2) summary
    pfam00566
    Location:38 → 237
    RabGAP-TBC; Rab-GTPase-TBC domain
    pfam00581
    Location:327 → 382
    Rhodanese; Rhodanese-like domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases