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LOC111126805 high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111126805, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111126805
Gene description
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like
See related
EnsemblRapid:LOC111126805
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111126805 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
23
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 3 NC_035782.1 (38727126..38746087)

Chromosome 3 - NC_035782.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111122824 Neighboring gene uncharacterized LOC111122822 Neighboring gene tripartite motif-containing protein 2-like Neighboring gene gastric triacylglycerol lipase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035782.1 Chromosome 3 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035782.1 Reference C_virginica-3.0 Primary Assembly

    Range
    38727126..38746087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022471686.1 → XP_022327394.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X2

    UniProtKB/TrEMBL
    A0A8B8DIH7
    Related
    XP_022327394.1, XM_022471686.1
    Conserved Domains (1) summary
    pfam00233
    Location:275 → 503
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_022471685.1 → XP_022327393.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X1

    UniProtKB/TrEMBL
    A0A8B8DHD9
    Related
    XP_022327393.1, XM_022471685.1
    Conserved Domains (1) summary
    pfam00233
    Location:275 → 504
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  3. XM_022471690.1 → XP_022327398.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X6

    UniProtKB/TrEMBL
    A0A8B8DGP8
    Related
    XP_022327398.1, XM_022471690.1
    Conserved Domains (1) summary
    pfam00233
    Location:268 → 497
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  4. XM_022471691.1 → XP_022327399.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X7

    UniProtKB/TrEMBL
    A0A8B8DHE3
    Related
    XP_022327399.1, XM_022471691.1
    Conserved Domains (1) summary
    pfam00233
    Location:266 → 495
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  5. XM_022471689.1 → XP_022327397.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X5

    UniProtKB/TrEMBL
    A0A8B8DGX8
    Related
    XP_022327397.1, XM_022471689.1
    Conserved Domains (1) summary
    pfam00233
    Location:268 → 497
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  6. XM_022471694.1 → XP_022327402.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X10

    UniProtKB/TrEMBL
    A0A8B8DGY2
    Related
    XP_022327402.1, XM_022471694.1
    Conserved Domains (1) summary
    pfam00233
    Location:261 → 490
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  7. XM_022471693.1 → XP_022327401.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X9

    UniProtKB/TrEMBL
    A0A8B8DK81
    Related
    XP_022327401.1, XM_022471693.1
    Conserved Domains (1) summary
    pfam00233
    Location:262 → 491
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  8. XM_022471687.1 → XP_022327395.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X3

    UniProtKB/TrEMBL
    A0A8B8DHY5
    Related
    XP_022327395.1, XM_022471687.1
    Conserved Domains (1) summary
    pfam00233
    Location:271 → 500
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  9. XM_022471695.1 → XP_022327403.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X11

    UniProtKB/TrEMBL
    A0A8B8DGQ2
    Related
    XP_022327403.1, XM_022471695.1
    Conserved Domains (1) summary
    pfam00233
    Location:259 → 488
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  10. XM_022471688.1 → XP_022327396.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X4

    UniProtKB/TrEMBL
    A0A8B8DJZ2
    Related
    XP_022327396.1, XM_022471688.1
    Conserved Domains (1) summary
    pfam00233
    Location:269 → 498
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  11. XM_022471696.1 → XP_022327404.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X12

    UniProtKB/TrEMBL
    A0A8B8DHE8
    Related
    XP_022327404.1, XM_022471696.1
    Conserved Domains (1) summary
    pfam00233
    Location:255 → 484
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  12. XM_022471692.1 → XP_022327400.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X8

    UniProtKB/TrEMBL
    A0A8B8DI68
    Related
    XP_022327400.1, XM_022471692.1
    Conserved Domains (1) summary
    pfam00233
    Location:265 → 494
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  13. XM_022471697.1 → XP_022327405.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X13

    UniProtKB/TrEMBL
    A0A8B8DI72
    Related
    XP_022327405.1, XM_022471697.1
    Conserved Domains (1) summary
    pfam00233
    Location:251 → 480
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
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