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LOC111108808 toll-like receptor 1 [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111108808, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111108808
Gene description
toll-like receptor 1
See related
EnsemblRapid:LOC111108808
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111108808 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 8 NC_035787.1 (15816931..15820013)

Chromosome 8 - NC_035787.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 6 Neighboring gene toll-like receptor 6 Neighboring gene toll-like receptor 6 Neighboring gene uncharacterized LOC111108810

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035787.1 Chromosome 8 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035787.1 Reference C_virginica-3.0 Primary Assembly

    Range
    15816931..15820013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022444895.1 → XP_022300603.1  toll-like receptor 1

    UniProtKB/TrEMBL
    A0A8B8BBN9
    Related
    XP_022300603.1, XM_022444895.1
    Conserved Domains (5) summary
    sd00031
    Location:64 → 90
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:367 → 393
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:89 → 151
    LRR_8; Leucine rich repeat
    cl23749
    Location:660 → 793
    TIR_2; TIR domain
    cl26161
    Location:327 → 573
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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