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LOC111104187 toll-like receptor 4 [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111104187, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111104187
Gene description
toll-like receptor 4
See related
EnsemblRapid:LOC111104187
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111104187 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 7 NC_035786.1 (26822104..26829035, complement)

Chromosome 7 - NC_035786.1Genomic Context describing neighboring genes Neighboring gene peroxisomal targeting signal 2 receptor-like Neighboring gene uncharacterized LOC111104972 Neighboring gene toll-like receptor 4 Neighboring gene toll-like receptor 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035786.1 Chromosome 7 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035786.1 Reference C_virginica-3.0 Primary Assembly

    Range
    26822104..26829035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022437999.1 → XP_022293707.1  toll-like receptor 4

    UniProtKB/TrEMBL
    A0A8B8AQD5
    Related
    XP_022293707.1, XM_022437999.1
    Conserved Domains (4) summary
    sd00031
    Location:66 → 90
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:303 → 328
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:499 → 558
    LRR_8; Leucine rich repeat
    cl23749
    Location:693 → 819
    TIR_2; TIR domain
Nucleotide Protein
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