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LOC111100224 anoctamin-4-like [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111100224, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111100224
Gene description
anoctamin-4-like
See related
EnsemblRapid:LOC111100224
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111100224 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
31
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 6 NC_035785.1 (24801480..24841019)

Chromosome 6 - NC_035785.1Genomic Context describing neighboring genes Neighboring gene perlucin-like protein Neighboring gene arrestin domain-containing protein 17-like Neighboring gene anoctamin-4-like Neighboring gene uncharacterized LOC111101239

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035785.1 Chromosome 6 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035785.1 Reference C_virginica-3.0 Primary Assembly

    Range
    24801480..24841019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022431884.1 → XP_022287592.1  anoctamin-4-like isoform X1

    UniProtKB/TrEMBL
    A0A8B8A7Z7
    Related
    XP_022287592.1, XM_022431884.1
    Conserved Domains (2) summary
    pfam04547
    Location:374 → 947
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:139 → 371
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  2. XM_022431885.1 → XP_022287593.1  anoctamin-4-like isoform X2

    UniProtKB/TrEMBL
    A0A8B8AAN9
    Related
    XP_022287593.1, XM_022431885.1
    Conserved Domains (2) summary
    pfam04547
    Location:372 → 945
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:139 → 369
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  3. XM_022431886.1 → XP_022287594.1  anoctamin-4-like isoform X3

    UniProtKB/TrEMBL
    A0A8B8ACE3
    Related
    XP_022287594.1, XM_022431886.1
    Conserved Domains (2) summary
    pfam04547
    Location:362 → 935
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:139 → 359
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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