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LOC111100192 anoctamin-4-like [ Crassostrea virginica (eastern oyster) ]

Gene ID: 111100192, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111100192
Gene description
anoctamin-4-like
See related
EnsemblRapid:LOC111100192
Gene type
protein coding
RefSeq status
MODEL
Organism
Crassostrea virginica
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Crassostrea
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Genomic context

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See LOC111100192 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
34
Annotation release Status Assembly Chr Location
100 current C_virginica-3.0 (GCF_002022765.2) 6 NC_035785.1 (49258347..49305381)

Chromosome 6 - NC_035785.1Genomic Context describing neighboring genes Neighboring gene perlucin-like protein Neighboring gene arrestin domain-containing protein 17-like Neighboring gene uncharacterized LOC111100193 Neighboring gene P2X purinoceptor 7-like Neighboring gene anoctamin-4-like Neighboring gene uncharacterized LOC111101845

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035785.1 Chromosome 6 Reference C_virginica-3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Crassostrea virginica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C_virginica-3.0 Primary Assembly

Genomic

  1. NC_035785.1 Reference C_virginica-3.0 Primary Assembly

    Range
    49258347..49305381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022431845.1 → XP_022287553.1  anoctamin-4-like isoform X1

    UniProtKB/TrEMBL
    A0A8B8AAJ3
    Related
    XP_022287553.1, XM_022431845.1
    Conserved Domains (2) summary
    pfam04547
    Location:396 → 969
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:161 → 393
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  2. XM_022431846.1 → XP_022287554.1  anoctamin-4-like isoform X2

    UniProtKB/TrEMBL
    A0A8B8ACA2
    Related
    XP_022287554.1, XM_022431846.1
    Conserved Domains (2) summary
    pfam04547
    Location:381 → 954
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:146 → 378
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  3. XM_022431851.1 → XP_022287559.1  anoctamin-4-like isoform X6

    UniProtKB/TrEMBL
    A0A8B8ACA7
    Related
    XP_022287559.1, XM_022431851.1
    Conserved Domains (2) summary
    pfam04547
    Location:357 → 930
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:122 → 354
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  4. XM_022431849.1 → XP_022287557.1  anoctamin-4-like isoform X5

    UniProtKB/TrEMBL
    A0A8B8A7W4
    Related
    XP_022287557.1, XM_022431849.1
    Conserved Domains (2) summary
    pfam04547
    Location:364 → 937
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:129 → 361
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  5. XM_022431847.1 → XP_022287555.1  anoctamin-4-like isoform X3

    UniProtKB/TrEMBL
    A0A8B8A8R8
    Related
    XP_022287555.1, XM_022431847.1
    Conserved Domains (2) summary
    pfam04547
    Location:373 → 946
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:138 → 370
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  6. XM_022431848.1 → XP_022287556.1  anoctamin-4-like isoform X4

    UniProtKB/TrEMBL
    A0A8B8A7X6
    Related
    XP_022287556.1, XM_022431848.1
    Conserved Domains (2) summary
    pfam04547
    Location:372 → 945
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:139 → 369
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  7. XM_022431852.1 → XP_022287560.1  anoctamin-4-like isoform X7

    UniProtKB/TrEMBL
    A0A8B8A8S1
    Related
    XP_022287560.1, XM_022431852.1
    Conserved Domains (2) summary
    pfam04547
    Location:349 → 922
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:114 → 346
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin

  8. XM_022431853.1 → XP_022287561.1  anoctamin-4-like isoform X8

    UniProtKB/TrEMBL
    A0A8B8A7Y2
    Related
    XP_022287561.1, XM_022431853.1
    Conserved Domains (2) summary
    pfam04547
    Location:286 → 859
    Anoctamin; Calcium-activated chloride channel
    pfam16178
    Location:51 → 283
    Anoct_dimer; Dimerisation domain of Ca+-activated chloride-channel, anoctamin
Nucleotide Protein
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