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CSNKA2IP casein kinase 2 subunit alpha' interacting protein [ Homo sapiens (human) ]

Gene ID: 111064647, updated on 15-Mar-2024

Summary

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Official Symbol
CSNKA2IPprovided by HGNC
Official Full Name
casein kinase 2 subunit alpha' interacting proteinprovided by HGNC
Primary source
HGNC:HGNC:53637
See related
Ensembl:ENSG00000283434 AllianceGenome:HGNC:53637
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

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See CSNKA2IP in Genome Data Viewer
Location:
3p11.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (88338456..88467594)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (88414407..88543775)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (88387606..88516744)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20118 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20119 Neighboring gene chromosome 3 open reading frame 38 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20120 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:88279578-88280777 Neighboring gene uncharacterized LOC105377202 Neighboring gene ATP binding cassette subfamily F member 2 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:88557374-88557974 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:88557975-88558575 Neighboring gene NADH:ubiquinone oxidoreductase subunit A5 pseudogene 5 Neighboring gene NANOG hESC enhancer GRCh37_chr3:88856621-88857122 Neighboring gene interactor of little elongation complex ELL subunit 2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
casein kinase II subunit alpha'-interacting protein
Names
casein kinase 2 alpha prime interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368165.1 → NP_001355094.1  casein kinase II subunit alpha'-interacting protein

    Status: VALIDATED

    Source sequence(s)
    AC108750, AC126475
    Consensus CDS
    CCDS93323.1
    UniProtKB/Swiss-Prot
    A0A1B0GTH6
    Related
    ENSP00000489704.1, ENST00000637986.2

  2. NM_001368166.1 → NP_001355095.1  casein kinase II subunit alpha'-interacting protein

    Status: VALIDATED

    Source sequence(s)
    AC108750, AC126475
    Consensus CDS
    CCDS93323.1
    UniProtKB/Swiss-Prot
    A0A1B0GTH6

  3. NM_001368167.1 → NP_001355096.1  casein kinase II subunit alpha'-interacting protein

    Status: VALIDATED

    Source sequence(s)
    AC108750, AC126475
    Consensus CDS
    CCDS93323.1
    UniProtKB/Swiss-Prot
    A0A1B0GTH6

  4. NM_001368168.1 → NP_001355097.1  casein kinase II subunit alpha'-interacting protein

    Status: VALIDATED

    Source sequence(s)
    AC108750, AC126475
    Consensus CDS
    CCDS93323.1
    UniProtKB/Swiss-Prot
    A0A1B0GTH6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    88338456..88467594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047447366.1 → XP_047303322.1  casein kinase II subunit alpha'-interacting protein isoform X1

  2. XM_047447367.1 → XP_047303323.1  casein kinase II subunit alpha'-interacting protein isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    88414407..88543775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054345075.1 → XP_054201050.1  casein kinase II subunit alpha'-interacting protein isoform X3

  2. XM_054345076.1 → XP_054201051.1  casein kinase II subunit alpha'-interacting protein isoform X3

  3. XM_054345074.1 → XP_054201049.1  casein kinase II subunit alpha'-interacting protein isoform X3

  4. XM_054345077.1 → XP_054201052.1  casein kinase II subunit alpha'-interacting protein isoform X1

  5. XM_054345078.1 → XP_054201053.1  casein kinase II subunit alpha'-interacting protein isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1B0GTH6.1 GenPept UniProtKB/Swiss-Prot:A0A1B0GTH6

Gene LinkOut

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