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LOC111055362 host cell factor 1-like [ Nilaparvata lugens (brown planthopper) ]

Gene ID: 111055362, updated on 7-Dec-2023

Summary

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Gene symbol
LOC111055362
Gene description
host cell factor 1-like
See related
EnsemblRapid:LOC111055362
Gene type
protein coding
RefSeq status
MODEL
Organism
Nilaparvata lugens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Auchenorrhyncha; Fulgoroidea; Delphacidae; Delphacinae; Nilaparvata
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Genomic context

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See LOC111055362 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM1435652v1 (GCF_014356525.1) 12 NC_052515.1 (14773022..14892449, complement)
100 previous assembly NilLug1.0 (GCF_000757685.1) Unplaced Scaffold NW_019107082.1 (158991..165273, complement)

Chromosome 12 - NC_052515.1Genomic Context describing neighboring genes Neighboring gene daughter of sevenless Neighboring gene uncharacterized LOC111056542 Neighboring gene lipase 1-like Neighboring gene lipase 3-like Neighboring gene rhomboid-related protein 4-like Neighboring gene endochitinase Neighboring gene uncharacterized LOC111048622 Neighboring gene uncharacterized LOC120353922 Neighboring gene putative neutral sphingomyelinase Neighboring gene splicing regulatory protein 54

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nilaparvata lugens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1435652v1 Primary Assembly

Genomic

  1. NC_052515.1 Reference ASM1435652v1 Primary Assembly

    Range
    14773022..14892449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039438905.1 → XP_039294839.1  host cell factor 1-like isoform X2

    Related
    XP_039294839.1, XM_039438905.1
    Conserved Domains (3) summary
    PHA03098
    Location:2 → 292
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:17 → 68
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:384 → 756
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_022342549.2 → XP_022198241.2  host cell factor 1-like isoform X1

    Related
    XP_022198241.2, XM_022342549.2
    Conserved Domains (4) summary
    PLN02193
    Location:1 → 303
    PLN02193; nitrile-specifier protein
    sd00038
    Location:24 → 69
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:439 → 811
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam13854
    Location:300 → 341
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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