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LOC111015786 hydroxyproline O-galactosyltransferase GALT2 [ Momordica charantia (bitter melon) ]

Gene ID: 111015786, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111015786
Gene description
hydroxyproline O-galactosyltransferase GALT2
Gene type
protein coding
RefSeq status
MODEL
Organism
Momordica charantia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Genomic context

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See LOC111015786 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104529.1 (405260..411556)

NW_019104529.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 6 Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 Neighboring gene CSC1-like protein ERD4 Neighboring gene uncharacterized LOC111015789

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019104529 Unplaced Scaffold Reference ASM199503v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM199503v1

Genomic

  1. NW_019104529.1 Reference ASM199503v1

    Range
    405260..411556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022290940.1 → XP_022146632.1  hydroxyproline O-galactosyltransferase GALT2

    UniProtKB/TrEMBL
    A0A6J1D042
    Conserved Domains (1) summary
    PLN03133
    Location:152 → 679
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein Strain
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