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LOC111012625 probable beta-1,4-xylosyltransferase IRX9H [ Momordica charantia (bitter melon) ]

Gene ID: 111012625, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111012625
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Gene type
protein coding
RefSeq status
MODEL
Organism
Momordica charantia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Genomic context

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See LOC111012625 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104488.1 (2139049..2142607)

NW_019104488.1Genomic Context describing neighboring genes Neighboring gene receptor protein-tyrosine kinase CEPR1 Neighboring gene receptor-like protein kinase HAIKU2 Neighboring gene uncharacterized LOC111010308 Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019104488 Unplaced Scaffold Reference ASM199503v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM199503v1

Genomic

  1. NW_019104488.1 Reference ASM199503v1

    Range
    2139049..2142607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022286847.1 → XP_022142539.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A6J1CLT1
    Conserved Domains (1) summary
    cd00218
    Location:155 → 383
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

RNA

  1. XR_002601605.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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