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LOC111008954 hydroxyproline O-galactosyltransferase GALT6 [ Momordica charantia (bitter melon) ]

Gene ID: 111008954, updated on 21-Dec-2023

Summary

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Gene symbol
LOC111008954
Gene description
hydroxyproline O-galactosyltransferase GALT6
Gene type
protein coding
RefSeq status
MODEL
Organism
Momordica charantia
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Genomic context

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See LOC111008954 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM199503v1 (GCF_001995035.1) Unplaced Scaffold NW_019104497.1 (2091862..2095411, complement)

NW_019104497.1Genomic Context describing neighboring genes Neighboring gene AAA-ATPase At3g28580-like Neighboring gene uncharacterized LOC111008957 Neighboring gene AAA-ATPase At3g28580-like Neighboring gene AAA-ATPase ASD, mitochondrial-like Neighboring gene uncharacterized LOC111008862 Neighboring gene probable myosin-binding protein 5 Neighboring gene polynucleotide 5'-hydroxyl-kinase NOL9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019104497 Unplaced Scaffold Reference ASM199503v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Momordica charantia Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM199503v1

Genomic

  1. NW_019104497.1 Reference ASM199503v1

    Range
    2091862..2095411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022281838.1 → XP_022137530.1  hydroxyproline O-galactosyltransferase GALT6

    UniProtKB/TrEMBL
    A0A6J1C6W8
    Conserved Domains (1) summary
    PLN03133
    Location:159 → 664
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein Strain
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