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LOC111001440 carotenoid isomerooxygenase-like [ Pieris rapae (cabbage white) ]

Gene ID: 111001440, updated on 30-Nov-2023

Summary

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Gene symbol
LOC111001440
Gene description
carotenoid isomerooxygenase-like
See related
EnsemblRapid:ENSPRPG00005007932
Gene type
protein coding
RefSeq status
MODEL
Organism
Pieris rapae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris
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Genomic context

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See LOC111001440 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
101 current ilPieRapa1.1 (GCF_905147795.1) 9 NC_059517.1 (5476276..5482994, complement)
100 previous assembly P_rapae_3842_assembly_v2 (GCF_001856805.1) Unplaced Scaffold NW_019094060.1 (137772..145914, complement)

Chromosome 9 - NC_059517.1Genomic Context describing neighboring genes Neighboring gene neuromedin-U receptor 2 Neighboring gene carotenoid isomerooxygenase Neighboring gene malate dehydrogenase-like Neighboring gene Phospholipase C at 21C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The molecular genetic basis of herbivory between butterflies and their host plants. Nallu S, et al. Nat Ecol Evol, 2018 Sep. PMID 30076351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-carotene 15,15'-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carotenoid isomerooxygenase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pieris rapae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilPieRapa1.1 Primary Assembly

Genomic

  1. NC_059517.1 Reference ilPieRapa1.1 Primary Assembly

    Range
    5476276..5482994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022271340.2 → XP_022127032.2  carotenoid isomerooxygenase-like

    Related
    ENSPRPP00005011928.1, ENSPRPT00005015250.1
Nucleotide Protein
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Molecular Biology Databases