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LOC110999618 elongation of very long chain fatty acids protein 4 [ Pieris rapae (cabbage white) ]

Gene ID: 110999618, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110999618
Gene description
elongation of very long chain fatty acids protein 4
See related
EnsemblRapid:ENSPRPG00005003759
Gene type
protein coding
RefSeq status
MODEL
Organism
Pieris rapae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris
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Genomic context

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See LOC110999618 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ilPieRapa1.1 (GCF_905147795.1) 18 NC_059526.1 (3573326..3580776, complement)
100 previous assembly P_rapae_3842_assembly_v2 (GCF_001856805.1) Unplaced Scaffold NW_019093691.1 (72127..79711, complement)

Chromosome 18 - NC_059526.1Genomic Context describing neighboring genes Neighboring gene glycine receptor subunit alpha-1 Neighboring gene MORN repeat-containing protein retinophilin Neighboring gene proton-coupled amino acid transporter-like protein CG1139 Neighboring gene sucrose-6-phosphate hydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The molecular genetic basis of herbivory between butterflies and their host plants. Nallu S, et al. Nat Ecol Evol, 2018 Sep. PMID 30076351, Free PMC Article
  2. Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study. Sikkink KL, et al. BMC Genomics, 2017 May 26. PMID 28549454, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation, monounsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, polyunsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, saturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation of very long chain fatty acids protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pieris rapae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilPieRapa1.1 Primary Assembly

Genomic

  1. NC_059526.1 Reference ilPieRapa1.1 Primary Assembly

    Range
    3573326..3580776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022268775.2 → XP_022124467.2  elongation of very long chain fatty acids protein 4

    Related
    ENSPRPP00005005535.1, ENSPRPT00005007157.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases