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bark protein bark beetle [ Pieris rapae (cabbage white) ]

Gene ID: 110996259, updated on 24-May-2024

Summary

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Gene symbol
bark
Gene description
protein bark beetle
See related
EnsemblRapid:ENSPRPG00005005875
Gene type
protein coding
RefSeq status
MODEL
Organism
Pieris rapae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Pieridae; Pierinae; Pieris
Orthologs
fruit fly all
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Genomic context

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See bark in Genome Data Viewer
Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ilPieRapa1.1 (GCF_905147795.1) 9 NC_059517.1 (5579691..5610913)
100 previous assembly P_rapae_3842_assembly_v2 (GCF_001856805.1) Unplaced Scaffold NW_019093384.1 (55851..87982)

Chromosome 9 - NC_059517.1Genomic Context describing neighboring genes Neighboring gene Phospholipase C at 21C Neighboring gene mediator complex subunit 17 Neighboring gene Repressor splicing factor 1 Neighboring gene uncharacterized LOC110998093 Neighboring gene Equilibrative nucleoside transporter 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The molecular genetic basis of herbivory between butterflies and their host plants. Nallu S, et al. Nat Ecol Evol, 2018 Sep. PMID 30076351, Free PMC Article
  2. Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study. Sikkink KL, et al. BMC Genomics, 2017 May 26. PMID 28549454, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein bark beetle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pieris rapae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilPieRapa1.1 Primary Assembly

Genomic

  1. NC_059517.1 Reference ilPieRapa1.1 Primary Assembly

    Range
    5579691..5610913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022263846.2 → XP_022119538.2  protein bark beetle isoform X1

    Related
    ENSPRPP00005008830.1, ENSPRPT00005011301.1

  2. XM_022263847.2 → XP_022119539.2  protein bark beetle isoform X2

    Related
    ENSPRPP00005008833.1, ENSPRPT00005011305.1

  3. XM_022263849.2 → XP_022119541.2  protein bark beetle isoform X4

  4. XM_022263848.2 → XP_022119540.2  protein bark beetle isoform X3

    Related
    ENSPRPP00005008837.1, ENSPRPT00005011311.1
Nucleotide Protein
Heading Accession and Version

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