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LOC110980264 xylosyltransferase 1-like [ Acanthaster planci (crown-of-thorns starfish) ]

Gene ID: 110980264, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110980264
Gene description
xylosyltransferase 1-like
See related
EnsemblRapid:LOC110980264
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthaster planci
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
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Genomic context

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See LOC110980264 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091416.1 (474874..530060)

NW_019091416.1Genomic Context describing neighboring genes Neighboring gene protein tweety homolog 1-A-like Neighboring gene dual specificity mitogen-activated protein kinase kinase 6-like Neighboring gene solute carrier organic anion transporter family member 1A4-like Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019091416 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OKI-Apl_1.0 Primary Assembly

Genomic

  1. NW_019091416.1 Reference OKI-Apl_1.0 Primary Assembly

    Range
    474874..530060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022236793.1 → XP_022092485.1  xylosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A8B7YJA2
    Related
    XP_022092485.1, XM_022236793.1
    Conserved Domains (2) summary
    pfam12529
    Location:675 → 856
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:375 → 643
    Branch; Core-2/I-Branching enzyme

  2. XM_022236794.1 → XP_022092486.1  xylosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8B7YLY4
    Related
    XP_022092486.1, XM_022236794.1
    Conserved Domains (2) summary
    pfam12529
    Location:669 → 850
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:375 → 637
    Branch; Core-2/I-Branching enzyme

  3. XM_022236795.1 → XP_022092487.1  xylosyltransferase 1-like isoform X3

    UniProtKB/TrEMBL
    A0A8B7YIQ4
    Related
    XP_022092487.1, XM_022236795.1
    Conserved Domains (2) summary
    pfam12529
    Location:659 → 840
    Xylo_C; Xylosyltransferase C terminal
    cl27418
    Location:375 → 627
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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