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LOC110979551 exostosin-like 3 [ Acanthaster planci (crown-of-thorns starfish) ]

Gene ID: 110979551, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110979551
Gene description
exostosin-like 3
See related
EnsemblRapid:LOC110979551
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthaster planci
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
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Genomic context

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See LOC110979551 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091408.1 (825678..858691, complement)

NW_019091408.1Genomic Context describing neighboring genes Neighboring gene exostosin-like 3 Neighboring gene exostosin-like 3 Neighboring gene cytochrome P450 2U1-like Neighboring gene vacuolar protein sorting-associated protein 11 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019091408 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OKI-Apl_1.0 Primary Assembly

Genomic

  1. NW_019091408.1 Reference OKI-Apl_1.0 Primary Assembly

    Range
    825678..858691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022235450.1 → XP_022091142.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8B7YHN4
    Related
    XP_022091142.1, XM_022235450.1
    Conserved Domains (3) summary
    pfam03016
    Location:205 → 523
    Exostosin; Exostosin family
    pfam09258
    Location:685 → 923
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl25732
    Location:55 → 190
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_022235451.1 → XP_022091143.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8B7YHN4
    Related
    XP_022091143.1, XM_022235451.1
    Conserved Domains (3) summary
    pfam03016
    Location:205 → 523
    Exostosin; Exostosin family
    pfam09258
    Location:685 → 923
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl25732
    Location:55 → 190
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_022235449.1 → XP_022091141.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8B7YHN4
    Related
    XP_022091141.1, XM_022235449.1
    Conserved Domains (3) summary
    pfam03016
    Location:205 → 523
    Exostosin; Exostosin family
    pfam09258
    Location:685 → 923
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl25732
    Location:55 → 190
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_022235452.1 → XP_022091144.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8B7YHN4
    Related
    XP_022091144.1, XM_022235452.1
    Conserved Domains (3) summary
    pfam03016
    Location:205 → 523
    Exostosin; Exostosin family
    pfam09258
    Location:685 → 923
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl25732
    Location:55 → 190
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_022235453.1 → XP_022091145.1  exostosin-like 3

    UniProtKB/TrEMBL
    A0A8B7YHN4
    Related
    XP_022091145.1, XM_022235453.1
    Conserved Domains (3) summary
    pfam03016
    Location:205 → 523
    Exostosin; Exostosin family
    pfam09258
    Location:685 → 923
    Glyco_transf_64; Glycosyl transferase family 64 domain
    cl25732
    Location:55 → 190
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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