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septin4b septin 4b [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110971536, updated on 15-Mar-2024

Summary

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Gene symbol
septin4b
Gene description
septin 4b
See related
Ensembl:ENSAPOG00000004169
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Also known as
sept4b
Orthologs
zebrafish all
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Genomic context

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See septin4b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 13 NC_067125.1 (38513048..38540802)

Chromosome 13 - NC_067125.1Genomic Context describing neighboring genes Neighboring gene elastin-like Neighboring gene LIM domain kinase 1a Neighboring gene MAX network transcriptional repressor a Neighboring gene methyltransferase 16, N6-methyladenosine

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067125.1 Chromosome 13 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin 4b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067125.1 Reference KAUST_Apoly_ChrSc

    Range
    38513048..38540802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022221898.2 → XP_022077590.1  septin 4b isoform X3

    UniProtKB/TrEMBL
    A0A3Q1EEK4
    Related
    ENSAPOP00000002721.1
    Conserved Domains (1) summary
    pfam00735
    Location:43 → 315
    Septin

  2. XM_022221899.2 → XP_022077591.1  septin 4b isoform X4

    UniProtKB/TrEMBL
    A0A3Q1EEK4
    Conserved Domains (1) summary
    pfam00735
    Location:36 → 308
    Septin

  3. XM_051957483.1 → XP_051813443.1  septin 4b isoform X1

  4. XM_051957484.1 → XP_051813444.1  septin 4b isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases