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LOC110970725 ras-related protein Rab-39B-like [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110970725, updated on 23-Nov-2023

Summary

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Gene symbol
LOC110970725
Gene description
ras-related protein Rab-39B-like
See related
Ensembl:ENSAPOG00000005301
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
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Genomic context

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See LOC110970725 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 17 NC_067129.1 (8033457..8038285, complement)

Chromosome 17 - NC_067129.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 12 Neighboring gene solute carrier family 7 member 3a Neighboring gene RAB38c, member of RAS oncogene family Neighboring gene uncharacterized LOC110959397

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067129.1 Chromosome 17 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-39B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067129.1 Reference KAUST_Apoly_ChrSc

    Range
    8033457..8038285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022221035.2 → XP_022076727.1  ras-related protein Rab-39B-like

    UniProtKB/TrEMBL
    A0A3Q1EKE5
    Related
    ENSAPOP00000003772.1
    Conserved Domains (1) summary
    cd04111
    Location:7 → 213
    Rab39; Rab GTPase family 39 (Rab39)
Nucleotide Protein
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