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rps16 ribosomal protein S16 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110968472, updated on 15-Mar-2024

Summary

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Gene symbol
rps16
Gene description
ribosomal protein S16
See related
Ensembl:ENSAPOG00000018869
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See rps16 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 1 NC_067113.1 (42197298..42201331, complement)

Chromosome 1 - NC_067113.1Genomic Context describing neighboring genes Neighboring gene myogenic factor 5 Neighboring gene myogenic factor 6 Neighboring gene protein phosphatase 1, regulatory subunit 12A Neighboring gene PRKC, apoptosis, WT1, regulator Neighboring gene E3 SUMO-protein ligase ZBED1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067113.1 Chromosome 1 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067113.1 Reference KAUST_Apoly_ChrSc

    Range
    42197298..42201331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022218365.2 → XP_022074057.1  40S ribosomal protein S16

    UniProtKB/TrEMBL
    A0A3Q1GLF7
    Related
    ENSAPOP00000031541.1
    Conserved Domains (1) summary
    PLN00210
    Location:6 → 146
    PLN00210; 40S ribosomal protein S16; Provisional
Nucleotide Protein
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