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skic2 SKI2 subunit of superkiller complex [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110967534, updated on 15-Mar-2024

Summary

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Gene symbol
skic2
Gene description
SKI2 subunit of superkiller complex
See related
Ensembl:ENSAPOG00000008257
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Also known as
skiv2l
Orthologs
human zebrafish all
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Genomic context

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See skic2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 11 NC_067123.1 (38885817..38911529, complement)

Chromosome 11 - NC_067123.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 268 Neighboring gene proline-rich transmembrane protein 1 Neighboring gene negative elongation factor complex member E Neighboring gene zinc finger and BTB domain-containing protein 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067123.1 Chromosome 11 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase SKI2W
Names
SKI2 homolog, superkiller viralicidic activity 2-like
Ski2 like RNA helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067123.1 Reference KAUST_Apoly_ChrSc

    Range
    38885817..38911529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022217181.2 → XP_022072873.2  helicase SKI2W

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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