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ddx52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110965774, updated on 15-Mar-2024

Summary

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Gene symbol
ddx52
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
See related
Ensembl:ENSAPOG00000008759
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See ddx52 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 17 NC_067129.1 (12446244..12453340)

Chromosome 17 - NC_067129.1Genomic Context describing neighboring genes Neighboring gene dynein, light chain, LC8-type 2b Neighboring gene HEAT repeat containing 6 Neighboring gene small nucleolar RNA Z17 Neighboring gene ribosomal protein L23a Neighboring gene baculoviral IAP repeat containing 2 Neighboring gene transcriptional coactivator YAP1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067129.1 Chromosome 17 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX52
Names
DExD-box helicase 52

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067129.1 Reference KAUST_Apoly_ChrSc

    Range
    12446244..12453340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022214928.2 → XP_022070620.1  probable ATP-dependent RNA helicase DDX52

    UniProtKB/TrEMBL
    A0A3Q1ES56
    Related
    ENSAPOP00000006873.1
    Conserved Domains (1) summary
    COG0513
    Location:189 → 652
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
Nucleotide Protein
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