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rab42a RAB42, member RAS oncogene family a [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110965216, updated on 15-Mar-2024

Summary

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Gene symbol
rab42a
Gene description
RAB42, member RAS oncogene family a
See related
Ensembl:ENSAPOG00000009188
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
zebrafish all
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Genomic context

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See rab42a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 11 NC_067123.1 (17171448..17178278, complement)

Chromosome 11 - NC_067123.1Genomic Context describing neighboring genes Neighboring gene glucocorticoid modulatory element binding protein 1 Neighboring gene U11 spliceosomal RNA Neighboring gene uncharacterized LOC110965218 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene small nucleolar RNA SNORD103/SNORD85

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067123.1 Chromosome 11 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-42a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067123.1 Reference KAUST_Apoly_ChrSc

    Range
    17171448..17178278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022214158.2 → XP_022069850.1  ras-related protein Rab-42a

    UniProtKB/TrEMBL
    A0A3Q1EQT8
    Related
    ENSAPOP00000007251.1
    Conserved Domains (1) summary
    cd04111
    Location:7 → 218
    Rab39; Rab GTPase family 39 (Rab39)
Nucleotide Protein
Heading Accession and Version

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