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ddx56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110961421, updated on 15-Mar-2024

Summary

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Gene symbol
ddx56
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 56
See related
Ensembl:ENSAPOG00000017113
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See ddx56 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 18 NC_067130.1 (19936461..19947187)

Chromosome 18 - NC_067130.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase Ab (cyclophilin A) Neighboring gene dual specificity protein phosphatase 26 Neighboring gene AE binding protein 1a Neighboring gene ash2 like, histone lysine methyltransferase complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067130.1 Chromosome 18 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX56
Names
DEAD-box helicase 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067130.1 Reference KAUST_Apoly_ChrSc

    Range
    19936461..19947187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022209033.2 → XP_022064725.2  probable ATP-dependent RNA helicase DDX56

Nucleotide Protein
Heading Accession and Version

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