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mtrex Mtr4 exosome RNA helicase [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110961084, updated on 15-Mar-2024

Summary

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Gene symbol
mtrex
Gene description
Mtr4 exosome RNA helicase
See related
Ensembl:ENSAPOG00000007814
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Also known as
skiv2l2
Orthologs
human zebrafish all
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Genomic context

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See mtrex in Genome Data Viewer
Location:
chromosome: 18
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 18 NC_067130.1 (12746872..12774994, complement)

Chromosome 18 - NC_067130.1Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 1a Neighboring gene nucleoredoxin like 2 Neighboring gene phospholipid phosphatase 1a Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 29 Neighboring gene proline-serine-threonine phosphatase interacting protein 2 Neighboring gene phorbol-12-myristate-13-acetate-induced protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067130.1 Chromosome 18 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome RNA helicase MTR4
Names
Ski2 like RNA helicase 2
superkiller viralicidic activity 2-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067130.1 Reference KAUST_Apoly_ChrSc

    Range
    12746872..12774994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022208557.2 → XP_022064249.1  exosome RNA helicase MTR4

    UniProtKB/TrEMBL
    A0A3Q1G4Y8
    Related
    ENSAPOP00000024983.1
    Conserved Domains (1) summary
    COG4581
    Location:31 → 1037
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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