U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110958652 probable ATP-dependent RNA helicase DDX17 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110958652, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC110958652
Gene description
probable ATP-dependent RNA helicase DDX17
See related
Ensembl:ENSAPOG00000017303
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110958652 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 3 NC_067115.1 (12960485..12971122, complement)

Chromosome 3 - NC_067115.1Genomic Context describing neighboring genes Neighboring gene chromosome 3 C22orf23 homolog Neighboring gene MICAL-like 1a Neighboring gene ADP-ribosylation factor-binding protein GGA1-like Neighboring gene mpv17-like protein Neighboring gene N-terminal asparagine amidase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_067115.1 Chromosome 3 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable ATP-dependent RNA helicase DDX17

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067115.1 Reference KAUST_Apoly_ChrSc

    Range
    12960485..12971122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022205286.2 → XP_022060978.1  probable ATP-dependent RNA helicase DDX17 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1GJF9, A0A3Q1GM55
    Related
    ENSAPOP00000030613.1
    Conserved Domains (1) summary
    cl26939
    Location:36 → 501
    DEXDc; DEAD-like helicases superfamily

  2. XM_051946311.1 → XP_051802271.1  probable ATP-dependent RNA helicase DDX17 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases