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ddx23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110958130, updated on 15-Mar-2024

Summary

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Gene symbol
ddx23
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
See related
Ensembl:ENSAPOG00000003760
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See ddx23 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 6 NC_067118.1 (29813491..29821502, complement)

Chromosome 6 - NC_067118.1Genomic Context describing neighboring genes Neighboring gene adenylate cyclase 6a Neighboring gene calcium channel, voltage-dependent, beta 3a Neighboring gene rho-related GTP-binding protein Rho6-like Neighboring gene DNA primase subunit 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067118.1 Chromosome 6 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX23
Names
DEAD-box helicase 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067118.1 Reference KAUST_Apoly_ChrSc

    Range
    29813491..29821502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022204490.2 → XP_022060182.1  probable ATP-dependent RNA helicase DDX23

    UniProtKB/TrEMBL
    A0A3Q1EDN4
    Related
    ENSAPOP00000002371.1
    Conserved Domains (2) summary
    COG0513
    Location:365 → 769
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cl26511
    Location:85 → 393
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein
Heading Accession and Version

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