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dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110957373, updated on 15-Mar-2024

Summary

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Gene symbol
dhx38
Gene description
DEAH (Asp-Glu-Ala-His) box polypeptide 38
See related
Ensembl:ENSAPOG00000010788
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See dhx38 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 2 NC_067114.1 (11855685..11876774)

Chromosome 2 - NC_067114.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110957370 Neighboring gene cytochrome b5 Neighboring gene uncharacterized LOC110957377 Neighboring gene uncharacterized LOC110957374 Neighboring gene zinc finger homeobox 3b Neighboring gene uncharacterized LOC110965733

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067114.1 Chromosome 2 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
Names
DEAH-box helicase 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067114.1 Reference KAUST_Apoly_ChrSc

    Range
    11855685..11876774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022203352.2 → XP_022059044.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1EWQ5
    Related
    ENSAPOP00000008549.1
    Conserved Domains (2) summary
    COG1643
    Location:542 → 1173
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    pfam10243
    Location:76 → 393
    MIP-T3; Microtubule-binding protein MIP-T3

  2. XM_022203353.2 → XP_022059045.1  pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X2

    Conserved Domains (2) summary
    COG1643
    Location:541 → 1172
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cl28310
    Location:49 → 287
    Rho; Transcription termination factor Rho [Transcription]
Nucleotide Protein
Heading Accession and Version

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