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ddx47 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110953121, updated on 15-Mar-2024

Summary

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Gene symbol
ddx47
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
See related
Ensembl:ENSAPOG00000021751
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See ddx47 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 21 NC_067133.1 (4176935..4183866, complement)

Chromosome 21 - NC_067133.1Genomic Context describing neighboring genes Neighboring gene serotonin N-acetyltransferase-like Neighboring gene myosin-10-like Neighboring gene WW domain binding protein 11 Neighboring gene keratin, type I cytoskeletal 13-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067133.1 Chromosome 21 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX47
Names
DEAD-box helicase 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067133.1 Reference KAUST_Apoly_ChrSc

    Range
    4176935..4183866 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022196970.2 → XP_022052662.1  probable ATP-dependent RNA helicase DDX47

    UniProtKB/TrEMBL
    A0A3Q1GS46
    Related
    ENSAPOP00000033253.1
    Conserved Domains (1) summary
    COG0513
    Location:9 → 454
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
Nucleotide Protein
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