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ddx5 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110948931, updated on 12-Sep-2024

Summary

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Gene symbol
ddx5
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 5
See related
Ensembl:ENSAPOG00000002749
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See ddx5 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 21 NC_067133.1 (4044512..4050067)

Chromosome 21 - NC_067133.1Genomic Context describing neighboring genes Neighboring gene karyopherin alpha 2 (RAG cohort 1, importin alpha 1) Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 Neighboring gene envoplakin b Neighboring gene serotonin N-acetyltransferase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067133.1 Chromosome 21 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067133.1 Reference KAUST_Apoly_ChrSc

    Range
    4044512..4050067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022190708.2 → XP_022046400.1  probable ATP-dependent RNA helicase DDX5 isoform X2

    Conserved Domains (1) summary
    cl26939
    Location:46 → 498
    DEXDc; DEAD-like helicases superfamily

  2. XM_022190707.2 → XP_022046399.1  probable ATP-dependent RNA helicase DDX5 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1EET6
    Related
    ENSAPOP00000001437.1
    Conserved Domains (1) summary
    cl26939
    Location:46 → 507
    DEXDc; DEAD-like helicases superfamily
Nucleotide Protein
Heading Accession and Version

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