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LOC110928012 2S seed storage protein-like [ Helianthus annuus (common sunflower) ]

Gene ID: 110928012, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110928012
Gene description
2S seed storage protein-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Helianthus annuus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Also known as
PawS1; sfti1; SFTI-1
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Genomic context

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See LOC110928012 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
101 current HanXRQr2.0-SUNRISE (GCF_002127325.2) 3 NC_035435.2 (133526321..133526941)
100 previous assembly HanXRQr1.0 (GCF_002127325.1) Linkage Group 3 NC_035435.1 (115168693..115169313)

Chromosome 3 - NC_035435.2Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene kinesin-like protein KIN-14N Neighboring gene uncharacterized LOC110929748 Neighboring gene 2S seed storage protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two proteins for the price of one: Structural studies of the dual-destiny protein preproalbumin with sunflower trypsin inhibitor-1. Franke B, et al. J Biol Chem, 2017 Jul 28. PMID 28536266, Free PMC Article
  2. Albumins and their processing machinery are hijacked for cyclic peptides in sunflower. Mylne JS, et al. Nat Chem Biol, 2011 May. PMID 21423169
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nutrient reservoir activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trypsin inhibitor 1
Names
Trypsin inhibitor 1
albumin
preproalbumin PawS1
trypsin inhibitor-1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Helianthus annuus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HanXRQr2.0-SUNRISE Primary Assembly

Genomic

  1. NC_035435.2 Reference HanXRQr2.0-SUNRISE Primary Assembly

    Range
    133526321..133526941
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022171271.1 → XP_022026963.1  trypsin inhibitor 1

    UniProtKB/TrEMBL
    H2L0T2
    Conserved Domains (1) summary
    cd00261
    Location:55 → 148
    AAI_SS; Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4GWU5.1 GenPept UniProtKB/Swiss-Prot:Q4GWU5

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials