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LOC110850903 delta-sarcoglycan [ Folsomia candida ]

Gene ID: 110850903, updated on 1-Jul-2024

Summary

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Gene symbol
LOC110850903
Gene description
delta-sarcoglycan
Locus tag
Fcan01_12100
See related
EnsemblRapid:LOC110850903
Gene type
protein coding
RefSeq status
MODEL
Organism
Folsomia candida
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Collembola; Entomobryomorpha; Isotomoidea; Isotomidae; Proisotominae; Folsomia
Orthologs
fruit fly all
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Genomic context

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See LOC110850903 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM221717v1 (GCF_002217175.1) Unplaced Scaffold NW_019091198.1 (2134725..2175037, complement)

NW_019091198.1Genomic Context describing neighboring genes Neighboring gene protein krueppel Neighboring gene ATP-binding cassette sub-family E member 1 pix Neighboring gene uncharacterized LOC118436054 Neighboring gene inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase Neighboring gene Dolichyl-phosphate beta-glucosyltransferase wollknaeuel

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019091198 Unplaced Scaffold Reference ASM221717v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
Zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Folsomia candida Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM221717v1

Genomic

  1. NW_019091198.1 Reference ASM221717v1

    Range
    2134725..2175037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035853095.1 → XP_035708988.1  delta-sarcoglycan

    Related
    XP_035708988.1, XM_035853095.1
    Conserved Domains (1) summary
    pfam04790
    Location:33 → 302
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_035853093.1 → XP_035708986.1  delta-sarcoglycan

    Related
    XP_035708986.1, XM_035853093.1
    Conserved Domains (1) summary
    pfam04790
    Location:33 → 302
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_035853094.1 → XP_035708987.1  delta-sarcoglycan

    Related
    XP_035708987.1, XM_035853094.1
    Conserved Domains (1) summary
    pfam04790
    Location:33 → 302
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_022098505.2 → XP_021954197.1  delta-sarcoglycan

    Related
    XP_021954197.1, XM_022098505.2
    Conserved Domains (1) summary
    pfam04790
    Location:33 → 302
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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