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LOC110800786 alpha-L-arabinofuranosidase 1-like [ Spinacia oleracea (spinach) ]

Gene ID: 110800786, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110800786
Gene description
alpha-L-arabinofuranosidase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Spinacia oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Genomic context

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See LOC110800786 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 1 NC_079487.1 (20295618..20301307, complement)
100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018932724.1 (99546..105221)

Chromosome 1 - NC_079487.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130466295 Neighboring gene uncharacterized LOC130466294 Neighboring gene aladin Neighboring gene transcription factor IIIA-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-arabinofuranosidase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BTI_SOV_V1 Primary Assembly

Genomic

  1. NC_079487.1 Reference BTI_SOV_V1 Primary Assembly

    Range
    20295618..20301307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022006109.2 → XP_021861801.1  alpha-L-arabinofuranosidase 1-like

    UniProtKB/TrEMBL
    A0A9R0K8Q3
    Conserved Domains (1) summary
    smart00813
    Location:456 → 643
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus

  2. XM_022006110.2 → XP_021861802.1  alpha-L-arabinofuranosidase 1-like

    UniProtKB/TrEMBL
    A0A9R0K8Q3
    Conserved Domains (1) summary
    smart00813
    Location:456 → 643
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus

  3. XM_022006112.2 → XP_021861804.1  alpha-L-arabinofuranosidase 1-like

    UniProtKB/TrEMBL
    A0A9R0K8Q3
    Conserved Domains (1) summary
    smart00813
    Location:456 → 643
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
Nucleotide Protein
Heading Accession and Version

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