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LOC110795777 polygalacturonate 4-alpha-galacturonosyltransferase [ Spinacia oleracea (spinach) ]

Gene ID: 110795777, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110795777
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Spinacia oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Genomic context

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See LOC110795777 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 2 NC_079488.1 (102361938..102369435, complement)
100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018932200.1 (164408..171892)

Chromosome 2 - NC_079488.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110776700 Neighboring gene gibberellin 20 oxidase 1-D Neighboring gene histone deacetylase complex subunit SAP18-like Neighboring gene uncharacterized LOC110795809

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BTI_SOV_V1 Primary Assembly

Genomic

  1. NC_079488.1 Reference BTI_SOV_V1 Primary Assembly

    Range
    102361938..102369435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022000796.2 → XP_021856488.1  polygalacturonate 4-alpha-galacturonosyltransferase

    UniProtKB/TrEMBL
    A0A9R0IWY8
    Conserved Domains (1) summary
    cl28622
    Location:89 → 686
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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