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LOC110788752 UDP-glucuronic acid decarboxylase 5 [ Spinacia oleracea (spinach) ]

Gene ID: 110788752, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110788752
Gene description
UDP-glucuronic acid decarboxylase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Spinacia oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Genomic context

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See LOC110788752 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 6 NC_079492.1 (109181071..109187164)
100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931561.1 (385552..391665)

Chromosome 6 - NC_079492.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110788751 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene histone H4 Neighboring gene uncharacterized LOC130463468

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BTI_SOV_V1 Primary Assembly

Genomic

  1. NC_079492.1 Reference BTI_SOV_V1 Primary Assembly

    Range
    109181071..109187164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021993394.2 → XP_021849086.1  UDP-glucuronic acid decarboxylase 5

    UniProtKB/TrEMBL
    A0A9R0IGU9
    Conserved Domains (1) summary
    cd05230
    Location:30 → 334
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

  2. XM_021993395.2 → XP_021849087.1  UDP-glucuronic acid decarboxylase 5

    UniProtKB/TrEMBL
    A0A9R0IGU9
    Conserved Domains (1) summary
    cd05230
    Location:30 → 334
    UGD_SDR_e; UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs
Nucleotide Protein
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