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LOC110784452 hydroxyproline O-galactosyltransferase GALT6-like [ Spinacia oleracea (spinach) ]

Gene ID: 110784452, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110784452
Gene description
hydroxyproline O-galactosyltransferase GALT6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Spinacia oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Genomic context

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See LOC110784452 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 1 NC_079487.1 (125213267..125218883, complement)
100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018931443.1 (960472..970819, complement)

Chromosome 1 - NC_079487.1Genomic Context describing neighboring genes Neighboring gene U1 spliceosomal RNA Neighboring gene uncharacterized LOC130459181 Neighboring gene uncharacterized LOC110784519 Neighboring gene exocyst complex component EXO84A Neighboring gene LRR receptor-like serine/threonine-protein kinase GSO1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BTI_SOV_V1 Primary Assembly

Genomic

  1. NC_079487.1 Reference BTI_SOV_V1 Primary Assembly

    Range
    125213267..125218883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021988905.2 → XP_021844597.1  hydroxyproline O-galactosyltransferase GALT6-like

    UniProtKB/TrEMBL
    A0A9R0I8L9
    Conserved Domains (1) summary
    PLN03133
    Location:86 → 619
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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