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LOC110777939 beta-1,4-xylosyltransferase IRX14-like [ Spinacia oleracea (spinach) ]

Gene ID: 110777939, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110777939
Gene description
beta-1,4-xylosyltransferase IRX14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Spinacia oleracea
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Genomic context

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See LOC110777939 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_06 current BTI_SOV_V1 (GCF_020520425.1) 3 NC_079489.1 (145992022..145999673)
100 previous assembly ASM200726v1 (GCF_002007265.1) Unplaced Scaffold NW_018934002.1 (4770..12527, complement)

Chromosome 3 - NC_079489.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130469655 Neighboring gene uncharacterized LOC130470152 Neighboring gene cysteine proteinase COT44-like Neighboring gene transfer RNA alanine (anticodon AGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-xylosyltransferase IRX14-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_020520425.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BTI_SOV_V1 Primary Assembly

Genomic

  1. NC_079489.1 Reference BTI_SOV_V1 Primary Assembly

    Range
    145992022..145999673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021982514.2 → XP_021838206.1  beta-1,4-xylosyltransferase IRX14-like

    UniProtKB/TrEMBL
    A0A9R0HWP7
    Conserved Domains (1) summary
    cl11394
    Location:153 → 412
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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